This is an R Markdown Notebook that will run all analyses (i.e. all R Notebooks) sequentially
here() starts at C:/Users/User/OneDrive - Universidad de Oviedo/IMIB/Analyses/MOTIVATE/DB_first_checkRunning: 1_divide_db_resurv_EVA.Rmd
processing file: 1_divide_db_resurv_EVA.Rmd
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output file: C:\Users\User\AppData\Local\Temp\RtmpMdm9R7\file11b84d546099.R
Adjuntando el paquete: ‘dplyr’
The following objects are masked from ‘package:stats’:
filter, lag
The following objects are masked from ‘package:base’:
intersect, setdiff, setequal, union
Aviso: One or more parsing issues, call `problems()` on your data frame for details,
e.g.:
dat <- vroom(...)
problems(dat)Rows: 2387117 Columns: 69── Column specification ──────────────────────────────────────────────────────────
Delimiter: "\t"
chr (33): Country, Biblioreference, Nr. table in publ., Nr. relevé in table, C...
dbl (20): PlotObservationID, PlotID, TV2 relevé number, Relevé area (m²), Aspe...
lgl (16): Lon1, Lon2, Lon3, Lon4, Lat1, Lat2, Lat3, Lat4, X1, X2, X3, X4, Y1, ...
ℹ Use `spec()` to retrieve the full column specification for this data.
ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.Running: 2_db_resurv_first_check.Rmd
processing file: 2_db_resurv_first_check.Rmd
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output file: C:\Users\User\AppData\Local\Temp\RtmpMdm9R7\file11b8474a2980.R
Adjuntando el paquete: ‘lubridate’
The following objects are masked from ‘package:base’:
date, intersect, setdiff, union
Aviso: One or more parsing issues, call `problems()` on your data frame for details,
e.g.:
dat <- vroom(...)
problems(dat)Rows: 425310 Columns: 69── Column specification ──────────────────────────────────────────────────────────
Delimiter: "\t"
chr (31): Country, Biblioreference, Nr. table in publ., Cover abundance scale,...
dbl (22): PlotObservationID, PlotID, TV2 relevé number, Nr. relevé in table, R...
lgl (16): Lon1, Lon2, Lon3, Lon4, Lat1, Lat2, Lat3, Lat4, X1, X2, X3, X4, Y1, ...
ℹ Use `spec()` to retrieve the full column specification for this data.
ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
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R version 4.4.2 (2024-10-31 ucrt)
Platform: x86_64-w64-mingw32/x64
Running under: Windows 10 x64 (build 19045)
Matrix products: default
locale:
[1] LC_COLLATE=Spanish_Spain.utf8 LC_CTYPE=Spanish_Spain.utf8
[3] LC_MONETARY=Spanish_Spain.utf8 LC_NUMERIC=C
[5] LC_TIME=Spanish_Spain.utf8
time zone: Europe/Paris
tzcode source: internal
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] readxl_1.4.3 purrr_1.0.2 stringr_1.5.1 ggplot2_3.5.1
[5] lubridate_1.9.4 tidyr_1.3.1 dplyr_1.1.4 readr_2.1.5
[9] here_1.0.1
loaded via a namespace (and not attached):
[1] bit_4.5.0.1 gtable_0.3.6 compiler_4.4.2 crayon_1.5.3
[5] tidyselect_1.2.1 parallel_4.4.2 scales_1.3.0 yaml_2.3.10
[9] fastmap_1.2.0 R6_2.5.1 labeling_0.4.3 generics_0.1.3
[13] knitr_1.49 tibble_3.2.1 munsell_0.5.1 rprojroot_2.0.4
[17] pillar_1.9.0 tzdb_0.4.0 rlang_1.1.4 utf8_1.2.4
[21] stringi_1.8.4 xfun_0.49 bit64_4.5.2 timechange_0.3.0
[25] cli_3.6.3 withr_3.0.2 magrittr_2.0.3 digest_0.6.37
[29] grid_4.4.2 vroom_1.6.5 hms_1.1.3 lifecycle_1.0.4
[33] vctrs_0.6.5 evaluate_1.0.1 glue_1.8.0 farver_2.1.2
[37] cellranger_1.1.0 colorspace_2.1-1 fansi_1.0.6 rmarkdown_2.29
[41] tools_4.4.2 pkgconfig_2.0.3 htmltools_0.5.8.1